About Jingbo Xia

Ph.D, Associate Professor of Department of Big Data Science, College of Informatics, Hubei Key Lab of Agricultural Bioinformatics, Huazhong Agricultural University.

Research Interest:

BioNLP （生物医药自然语言处理）
Data mining （数据挖掘）
Bioinformatics (生物信息学)

Research topics

Corpus design and Biomedical knowledge discovery based on BioNLP (语料库设计和基于BioNLP的知识挖掘)
- Lit-evi, a project on literature mining (文本证据平台支撑生物知识发现). Visit.
- AGAC, a project on corpus development in genetic alterations. (活跃基因注释语料库及知识发现). Visit.
- RTO, a project on rice ontology and knowledge discovery. (水稻作物本体和知识发现). Visit.
Data mining for geno-phenotype association (针对表型-基因型关联的生物信息数据挖掘)

For more. >>

Academic activities (in recent 3 yrs.)

PC=Program Committee, EC = Ethics Committee or Ethics Reviewer Committee

PC, BIBM 2024 — 2024 IEEE International Conference on Bioinformatics and Biomedicine, Dec, Lisbon, Portugal.
PC, LREC-COLING 2024 — The 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation in 2024 (LREC-COLING 2024), May, 2024, Turin, Italy.
PC, AAAI 2024 — Thirty-Eighth AAAI Conference on Artificial Intelligence (AAAI-24), 2024, Vancouvar, Canada.
PC, BIBM 2023 — 2023 IEEE International Conference on Bioinformatics and Biomedicine, Istanbul, Turkey.
PC, EC, EMNLP 2023 — The 2023 Conference on Empirical Methods in Natural Language Processing (EMNLP) , Dec, 2023, Singapore.
PC, EC, ACL 2023 — The 61st Annual Meeting of the Association for Computational Linguistics (ACL) in 2023, Toronto, Canada.
PC, AAAI 2023 — Thirty-Seventh AAAI Conference on Artificial Intelligence (AAAI-23), 2023, Washington DC, U.S .
PC (Workshop chair), KES 2023 — The 27th International Conference on Knowledge Based and Intelligent information and Engineering Systems (KES2023): Session IS35: Curative Power of Medical Data, 2023, Athens, Greece.
PC, CHIP 2022 — The China Conference on Health Information Processing (CHIP) 2022, Luzhou, China.
PC, BIBM 2022 — 2022 IEEE International Conference on Bioinformatics and Biomedicine, Las Vegas, USA& Changsha, China.
EC, EMNLP 2022 — The 2022 Conference on Empirical Methods in Natural Language Processing, 2022, Abu Dhabi, United Arab Emirates.
EC, NAACL 2022 — 2022 Annual Conference of the North American Chapter of the Association for Computational Linguistics, 2022, Seattle, U.S.
PC, LREC 2022 — 14th Edition of its Language Resources and Evaluation Conference, Palais du Pharo, France.

Publications

Data fusion algorithm/数据融合算法: PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies. Genome Medicine, 2024.

Data fusion algorithm/数据融合算法: Bridging Heterogeneous Mutation Data to Enhance Disease-Gene Discovery. Briefing in Bioinformatics, 2021.

Data mining algorithm/数据挖掘算法: High-quality Gene/Disease Embedding in A Multi-relational Heterogeneous Graph After A Joint Matrix/tensor Decomposition. Journal of Biomedical Informatics. 2022.

Corpus and knowledge discovery/语料库及知识发现: Cancer-Alterome: a literature-mined resource for regulatory events caused by genetic alterations in cancer. Scientific Data. 2024.

Corpus and knowledge discovery/语料库及知识发现: Predicting vegetable prices based on socio-economic indicators using social media. Future Generation Computer Systems, 2020

Corpus and knowledge discovery/语料库及知识发现: An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. BIBM, 2019.

BioNLP tool/生物医药自然语言处理工具: A Novel Metric to Quantify the Effect of Pathway Enrichment Evaluation With Respect to Biomedical Text-Mined Terms: Development and Feasibility Study. JMIR Medical Informatics, 2021.

For more publications. >>