Publications

2021

◆  Sizhuo Ouyang, Yuxing Wang, Kaiyin Zhou, Jingbo Xia*. LitCovid-AGAC: Cellular and Molecular Level Annotation Data Set Based on Covid-19. Genomics and Informatics, 2021; 19(3): e23.

◆  Xuan Qin, Xinzhi Yao, Jingbo Xia*. Metric Evaluation for Pathway Enrichment with Respect to Text-Mined Terms and A Case Study on Rapamycin Efficacy Investigation. JMIR Medical Informatics, 2021, 9(6): e28247.

◆  Kaiyin Zhou#, Yuxing Wang#, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia*. Bridging Heterogeneous Mutation Data to Enhance Disease-Gene Discovery. Briefing in Bioinformatics, 2021, bbab079.

◇  Sheng Zhang, Qi Luo, Yukun Feng, Ke Ding, Daniela Gifu, Silan Zhang, Xiaohang Ma, and Jingbo Xia. Key phrase Extraction by Improving TextRank with an Integration of Word Embedding and Syntactic Information. Recent Advances in Computer Science and Communications, 2021, 14(9): 2987-2993.

◇ Pierre Larmande, Yusha Liu, Xinzhi Yao, Jingbo Xia. OryzaGP 2021 update: a rice gene and protein dataset for named-entity recognition. Genomics and Informatics, 2021, 19(3):e27.

2020

◆  Yuyu Zheng, Xiangyu Meng, Pierre Zweigenbaum, Lingling Chen, Jingbo Xia*.  Hybrid Phenotype Mining Method for Investigating Off-target Protein and Underlying Side Effects of Anti-tumor Immunotherapy.  BMC Medical Informatics and Decision Making. 2020, 20(Suppl 3):133.

◇  Kevin Bretonnel Cohen, Daniela Gîfu, Youzhu Li, Anna Ripple, Jingbo Xia. MEDA 2020: The Curative Power of Medical Data. Proceedings of the ACM/IEEE Joint Conference on Digital Libraries (JCDL 2020). Page: 575–576, 2020.

◇  Kevin Bretonnel Cohen, Jingbo Xia, Daniela Gîfu. The CORD-19 corpus of novel coronavirus disease COVID-19 papers: A quick-start guide for natural language processing. Workshop of the Curative Power of Medical Data (MEDA 2020) (Accepted)

2019

◆  Youzhu Li, Huiling Zhou, Zhonglong Lin,Yifan Wang, Shunjie Chen, Chang Liu, Zhouyang Wang, Daniela Gifu, Jingbo Xia*. Predicting vegetable prices based on socio-economic indicators using social media. Future Generation Computer Systems, 2020, 102:876-888.

◆  Yuxing Wang, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu, Jingbo Xia*. An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery. BIBM 2019: International Conference on Bioinformatics & Biomedicine. Page: 512-519, San Diego, U.S, Nov, 2019.

◆  Yuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia*. An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks. BioNLP Open Shared Task 2019, workshop in EMNLP-IJCNLP 2019. Page: 62-71, Hong Kong, 2019.

◆  Shuguang Wang, Xiang-Yu Meng, Yuxing Wang, Yemao Liu, Jingbo Xia*. HPO-Shuffle, An Associated Gene Prioritization Strategy and Its Application in Drug Repurposing for the Treatment of Canine Epilepsy. Bioscience Reports, 2019, 39(9), DOI: 10.1042/BSR20191247.

◆  Mina Gachloo, Yuxing Wang, Jingbo Xia*. A Review of Drug Knowledge Discovery by Using BioNLP and Tensor or Matrix Decomposition. Genomics and Informatics, 2019, 17(2): e18.

◆  Kaiyin Zhou, Yuxing Wang, Sheng Zhang, Mina Gachloo, Jin-Dong Kim, Qi Luo, Kevin Bretonnel Cohen, Jingbo Xia*. GOF/LOF Knowledge Inference with Tensor Decomposition in Support of High order Link Discovery for Gene, Mutation and Disease. Mathematical Biosciences and Engineering, 2019, 16(3): 1376-1391.

◆  Alex Chengyu Fang, Yemao Liu, Yaping Lu, Jing Cao, Jingbo Xia*. A Corpus-Oriented Perspective on Terminologies of Side Effect and Adverse Reaction in Support of Text Retrieval for Drug Repurposing. the International Journal of Data Mining and Bioinformatics. 2018, 21(3): 269-286.

◆  Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia*. Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. 2018 11th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI 2018), pp:1-5, Oct, 2018, Beijing.

◆  Silan Zhang, Jingbo Xia*. Algebraic Fundamentals in Artificial Intelligence for the Purpose of Undergraduate Education and Training. In Journal of Physics: Conference Series, 1302, 3, p. 032021. IOP Publishing, 2019.

◇  Daniela Gîfu, Diana Trandabăț, Kevin Cohen, Jingbo Xia. Special Issue on the Curative Power of Medical Data. Data, 2019, 4(2), 85; https://doi.org/10.3390/ data4020085.


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